Diseases (25)

Overview

B-RAF is an oncogene belonging to the RAF family of serine–threonine-specific protein kinases, downstream of the epidermal growth factor receptor (EGFR) and the RAS family of small G-proteins (KRAS, HRAS, and NRAS) in the MAPK pathway. More than 30 mutations of the BRAF gene associated with human cancers have been identified. These mutations make the B-RRAF oncogene active, continuously sending signal downstream to the MAPK pathway, which then results in cell proliferation. The most common mutation is the missense mutation in codon 600 of exon 15 located on chromosome 7. BRAF mutations are most often found in melanoma (80%), colorectal cancer (5%), lung cancer (3%), ovarian cancer, and thyroid gland cancer. They are also found in lower prevalence in some other cancers such as acute myeloid leukemia, glioma, sarcomas, breast cancer, and hepatoma. More than 90% of mutations are the V600E (1799T>A) mutation. Recent studies have shown that metastatic colorectal cancer patients with this BRAF mutation do not have a strong response to anti-EGFR therapies such as cetuximab and panitumumab. This assay detects any amino acid change that has an A nucleotide at position 1799 in exon 15 of the BRAF gene regardless of any other common changes (could detect V600E/V600K/V600D), allowing identification of patients who are likely to benefit from such treatment.
The presence of somatic mutation in the B-RAF gene product, located downstream of EGFR signaling, has been shown to serve as a biomarker for poor prognosis and poor response to anti-EGFR cancer therapy in cancer patients.
Treatment of certain types of cancer with drugs targeted specifically at the EGFR receptor work only if there is no mutation of the EGFR pathway, which incldes BRAF. Therefore, before starting such therapy, analysis for EGFR family mutations is required. In fact, insurance companies do require this. Also BRAF is related to microsatellite instability status such that BRAF V600E positivity is unlikely to be a MLH1 mutant. In thyroid papillary carcinoma, BRAF mutation results in an aggressive phenotype so that knowledge of this status aids in treatment planning and recurrence risk assessment. 30 - 40% of papillary thyroid cancers are BRAF mutation positive. Treatment with MEK inhibitors may be useful in this group. About 35-45% of melanomas are BRAF muatation positive and this mutation is present in non-malignant nevi so that early detection may be possible. Melanomas with BRAF mutation are also sensitive to MEK inhibitors. 10-20% of ovarian cancers are positive for either BRAF or KRAS mutation, mostly low grade non-serous types.

Clinical Utility

  • Determining eligibility of and monitoring treatment with anti-EGFR therapy (cetuximab and panitumumab)
  • As an aid in diagnosis and management of melanoma
  • As an aid in diagnosis and management of colorectal cancer
  • As an aid in diagnosis and management of lung cancer
  • As an aid in diagnosis and management of thyroid cancer
  • Therapy monitoring and disease management

Interpretation

  • If either the BRAF V600E mutation or MLH1 promoter methylation is found in a microsatellite unstable tumor, then the tumor is probably sporadic and further work-up for HNPCC may not be warranted.
  • If no BRAF mutation or MLH1 methylation is found, then the tumor may be either sporadic or inherited, and further work-up for HNPCC is recommended. It is known now that the BRAF p.V600E mutation is detected in more than 70% tumors with loss of MLH1 due to promoter hypermethylation but is rarely detected in tumors with a germline MLH1 gene mutation. Thus, a germline mutation within the MLH1 gene is very unlikely in this case.
  • When testing is performed for therapeutic selection, especially for the efficacy of EGFR-targeted therapies in colorectal cancer, tumors lacking KRAS and BRAF might not be the best choice and may have limited therapeutic value for this patient.
  • Detection of BRF V600 mutation in melanoma might indicate good respond to BRAF targeted therapy.

    Positive :

  • Melanomas
  • Colorectal cancer
  • Lung cancer
  • Ovarian cancer
  • Thyroid gland cancer
  • Acute myeloid leukemia
  • Glioma
  • Sarcomas
  • Breast cancer
  • Hepatoma

Reference Ranges

Mutation not detected (Negative for mutation analyzed)
 

 

Methodology

Amplification refractory mutation system (ARMS), or real-time PCR detection method with single nucleotide extension, Chip array technology with allele specific primer extension, Pyrosequencing, conventional sequencing

Specimen Collection

Formalin fixed paraffin embedded (FFPE) tumor samples. Microdissection is recommended for better sensitivity and specificity. This would increase the fraction of tumor cells in the sample as it allows capture of the tumor cells. The presence of normal cells that carry wild type alleles can dilute the tumor cells, and dilution by normal and inflammatory cells might impact the sensitivity of mutation detection.

In colorectal cancer DNA can be also isolated from stool samples obtained from patients with colorectal cancer.

In lung cancer, sputum can be used for isolation of DNA from cancer cells.

Additional Testing

K-ras Gene Mutation Detection, Cytokeratin 8/18 Low Molecular Weight (CAM 5.2) by IHC (for melanoma), KIT Mutations (for melanoma), NRAS Mutation Detection (for melanoma), Microsatellite Instability/HNPCC by molecular method and by IHC (for colon cancer), Septin 9 (SEPT9) for colon cancer, Methylated DNA Detection by Real-Time PCR (for lung cancer), EGFR by FISH (for lung cancer), EGFR Mutation Detection by molecular method, p53 by molecular method and by IHC, Ki67 by IHC.

CPT
81210$175.4

ICD10
  • AK - Alaska
  • AL - Alabama
  • AR - Arkansas
  • AS - American Samoa
  • AZ - Arizona
  • CA - California - Entire State
  • CO - Colorado
  • CT - Connecticut
  • DC - District of Columbia
  • DE - Delaware
  • FL - Florida
  • GA - Georgia
  • GU - Guam
  • HI - Hawaii
  • IA - Iowa
  • ID - Idaho
  • IL - Illinois
  • IN - Indiana
  • KS - Kansas
  • KY - Kentucky
  • LA - Louisiana
  • MA - Massachusetts
  • MD - Maryland
  • ME - Maine
  • MI - Michigan
  • MN - Minnesota
  • MO - Missouri - Entire State
  • MS - Mississippi
  • MT - Montana
  • NC - North Carolina
  • ND - North Dakota
  • NE - Nebraska
  • NH - New Hampshire
  • NJ - New Jersey
  • NM - New Mexico
  • NV - Nevada
  • NY - New York - Entire State
  • OH - Ohio
  • OK - Oklahoma
  • OR - Oregon
  • PA - Pennsylvania
  • PR - Puerto Rico
  • RI - Rhode Island
  • SC - South Carolina
  • SD - South Dakota
  • TN - Tennessee
  • TX - Texas
  • UT - Utah
  • VA - Virginia
  • VI - Virgin Islands
  • VT - Vermont
  • WA - Washington
  • WI - Wisconsin
  • WV - West Virginia
  • WY - Wyoming
  • CNMI - Northern Mariana Islands
  • EM - Missouri - Northeastern & Southern
  • WM - Missouri - Northwestern
  • DN - New York - Downstate
  • QN - New York - Queens
  • UN - New York - Upstate
  • NF - California - Northern
  • SF - California - Southern
Showing results for all states.
Filter:
ICD10 CODE AND DESCRIPTIONLCD CODENCD CODE
C15 - Malignant neoplasm of esophagus
C16 - Malignant neoplasm of stomach
C16.0 - Malignant neoplasm of cardia
C16.1 - Malignant neoplasm of fundus of stomach
C16.2 - Malignant neoplasm of body of stomach
C16.3 - Malignant neoplasm of pyloric antrum
C16.4 - Malignant neoplasm of pylorus
C16.5 - Malignant neoplasm of lesser curvature of stomach, unspecified
C16.6 - Malignant neoplasm of greater curvature of stomach, unspecified
C16.8 - Malignant neoplasm of overlapping sites of stomach
C16.9 - Malignant neoplasm of stomach, unspecified
C17 - Malignant neoplasm of small intestine
C17.0 - Malignant neoplasm of duodenum
C17.1 - Malignant neoplasm of jejunum
C17.2 - Malignant neoplasm of ileum
C17.9 - Malignant neoplasm of small intestine, unspecified
C18 - Malignant neoplasm of colon
C18.2 - Malignant neoplasm of ascending colon
C18.4 - Malignant neoplasm of transverse colon
C18.6 - Malignant neoplasm of descending colon
C18.7 - Malignant neoplasm of sigmoid colon
C18.8 - Malignant neoplasm of overlapping sites of colon
C18.9 - Malignant neoplasm of colon, unspecified
C19 - Malignant neoplasm of rectosigmoid junction
C20 - Malignant neoplasm of rectum
C21 - Malignant neoplasm of anus and anal canal
C21.0 - Malignant neoplasm of anus, unspecified
C21.1 - Malignant neoplasm of anal canal
C21.8 - Malignant neoplasm of overlapping sites of rectum, anus and anal canal
C33 - Malignant neoplasm of trachea
C34 - Malignant neoplasm of bronchus and lung
C34.0 - Malignant neoplasm of main bronchus
C34.10 - Malignant neoplasm of upper lobe, unspecified bronchus or lung
C34.11 - Malignant neoplasm of upper lobe, right bronchus or lung
C34.2 - Malignant neoplasm of middle lobe, bronchus or lung
C34.3 - Malignant neoplasm of lower lobe, bronchus or lung
C34.9 - Malignant neoplasm of unspecified part of bronchus or lung
C34.90 - Malignant neoplasm of unspecified part of unspecified bronchus or lung
C34.91 - Malignant neoplasm of unspecified part of right bronchus or lung
C34.92 - Malignant neoplasm of unspecified part of left bronchus or lung
C38 - Malignant neoplasm of heart, mediastinum and pleura
C38.0 - Malignant neoplasm of heart
C38.1 - Malignant neoplasm of anterior mediastinum
C38.2 - Malignant neoplasm of posterior mediastinum
C38.3 - Malignant neoplasm of mediastinum, part unspecified
C38.4 - Malignant neoplasm of pleura
C38.8 - Malignant neoplasm of overlapping sites of heart, mediastinum and pleura
C39 - Malignant neoplasm of other and ill-defined sites in the respiratory system and intrathoracic organs
C39.0 - Malignant neoplasm of upper respiratory tract, part unspecified
C43 - Malignant melanoma of skin

Additional ICD10
  • AK - Alaska
  • AL - Alabama
  • AR - Arkansas
  • AS - American Samoa
  • AZ - Arizona
  • CA - California - Entire State
  • CO - Colorado
  • CT - Connecticut
  • DC - District of Columbia
  • DE - Delaware
  • FL - Florida
  • GA - Georgia
  • GU - Guam
  • HI - Hawaii
  • IA - Iowa
  • ID - Idaho
  • IL - Illinois
  • IN - Indiana
  • KS - Kansas
  • KY - Kentucky
  • LA - Louisiana
  • MA - Massachusetts
  • MD - Maryland
  • ME - Maine
  • MI - Michigan
  • MN - Minnesota
  • MO - Missouri - Entire State
  • MS - Mississippi
  • MT - Montana
  • NC - North Carolina
  • ND - North Dakota
  • NE - Nebraska
  • NH - New Hampshire
  • NJ - New Jersey
  • NM - New Mexico
  • NV - Nevada
  • NY - New York - Entire State
  • OH - Ohio
  • OK - Oklahoma
  • OR - Oregon
  • PA - Pennsylvania
  • PR - Puerto Rico
  • RI - Rhode Island
  • SC - South Carolina
  • SD - South Dakota
  • TN - Tennessee
  • TX - Texas
  • UT - Utah
  • VA - Virginia
  • VI - Virgin Islands
  • VT - Vermont
  • WA - Washington
  • WI - Wisconsin
  • WV - West Virginia
  • WY - Wyoming
  • CNMI - Northern Mariana Islands
  • EM - Missouri - Northeastern & Southern
  • WM - Missouri - Northwestern
  • DN - New York - Downstate
  • QN - New York - Queens
  • UN - New York - Upstate
  • NF - California - Northern
  • SF - California - Southern
Showing results for all states.
Filter:
ICD10 CODE AND DESCRIPTIONLCD CODENCD CODE
C15.3 - Malignant neoplasm of upper third of esophagus
C15.4 - Malignant neoplasm of middle third of esophagus
C15.5 - Malignant neoplasm of lower third of esophagus
C15.8 - Malignant neoplasm of overlapping sites of esophagus
C15.9 - Malignant neoplasm of esophagus, unspecified
C16.0 - Malignant neoplasm of cardia
C16.1 - Malignant neoplasm of fundus of stomach
C16.2 - Malignant neoplasm of body of stomach
C16.3 - Malignant neoplasm of pyloric antrum
C16.4 - Malignant neoplasm of pylorus
C16.5 - Malignant neoplasm of lesser curvature of stomach, unspecified
C16.6 - Malignant neoplasm of greater curvature of stomach, unspecified
C16.8 - Malignant neoplasm of overlapping sites of stomach
C16.9 - Malignant neoplasm of stomach, unspecified
C17.0 - Malignant neoplasm of duodenum
C17.1 - Malignant neoplasm of jejunum
C17.2 - Malignant neoplasm of ileum
C17.3 - Meckel's diverticulum, malignant
C17.8 - Malignant neoplasm of overlapping sites of small intestine
C17.9 - Malignant neoplasm of small intestine, unspecified
C18.0 - Malignant neoplasm of cecum
C18.1 - Malignant neoplasm of appendix
C18.2 - Malignant neoplasm of ascending colon
C18.3 - Malignant neoplasm of hepatic flexure
C18.4 - Malignant neoplasm of transverse colon
C18.5 - Malignant neoplasm of splenic flexure
C18.6 - Malignant neoplasm of descending colon
C18.7 - Malignant neoplasm of sigmoid colon
C18.8 - Malignant neoplasm of overlapping sites of colon
C18.9 - Malignant neoplasm of colon, unspecified
C21.0 - Malignant neoplasm of anus, unspecified
C21.1 - Malignant neoplasm of anal canal
C21.2 - Malignant neoplasm of cloacogenic zone
C21.8 - Malignant neoplasm of overlapping sites of rectum, anus and anal canal
C34.0 - Malignant neoplasm of main bronchus
C34.00 - Malignant neoplasm of unspecified main bronchus
C34.01 - Malignant neoplasm of right main bronchus
C34.02 - Malignant neoplasm of left main bronchus
C34.1 - Malignant neoplasm of upper lobe, bronchus or lung
C34.10 - Malignant neoplasm of upper lobe, unspecified bronchus or lung
C34.11 - Malignant neoplasm of upper lobe, right bronchus or lung
C34.12 - Malignant neoplasm of upper lobe, left bronchus or lung
C34.2 - Malignant neoplasm of middle lobe, bronchus or lung
C34.3 - Malignant neoplasm of lower lobe, bronchus or lung
C34.30 - Malignant neoplasm of lower lobe, unspecified bronchus or lung
C34.31 - Malignant neoplasm of lower lobe, right bronchus or lung
C34.32 - Malignant neoplasm of lower lobe, left bronchus or lung
C34.8 - Malignant neoplasm of overlapping sites of bronchus and lung
C34.80 - Malignant neoplasm of overlapping sites of unspecified bronchus and lung
C34.81 - Malignant neoplasm of overlapping sites of right bronchus and lung

References